rs27402222 SNP Detail

Summary

• ID
  rs27402222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90944576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC CTTATGGACT TCACGCCTGT
  Y
  CTTCCCTTTG CAGGTTTCCT ACATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37605061	NES09105232	PERLEGEN	MM_PANEL2	f	SNP		C	T	T			C		C	T		C
ss45334479	mCV22767218	ABI	CRAMUS_MOUSE	f	SNP	T	C			T	C
ss146922369	ENSMUSSNP6173508	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C				C
ss320391687	CHEV_2_90954388	CHEVERUD	SCREENING_POP	f	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27402222					SNP	T	C	T	T	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37605061	NES09105232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90944576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	811 bp proximal
Rr373534	regulatory region 373534	564 bp downstream
Rr560649	regulatory region 560649	1343 bp distal
Rr560650	regulatory region 560650	60 bp distal
Rr560651	regulatory region 560651	958 bp proximal
Rr560652	regulatory region 560652	1021 bp proximal
Spi1	Spi-1 proto-oncogene	Intron
Tssr18850	transcription start site region 18850	953 bp downstream
Tssr18851	transcription start site region 18851	27 bp upstream
Tssr18852	transcription start site region 18852	84 bp upstream
Tssr18853	transcription start site region 18853	929 bp upstream
Tssr18854	transcription start site region 18854	964 bp upstream
Tssr18855	transcription start site region 18855	1129 bp upstream
Tssr18856	transcription start site region 18856	1176 bp upstream
Tssr18857	transcription start site region 18857	1291 bp upstream
Tssr18858	transcription start site region 18858	1355 bp upstream
Tssr18859	transcription start site region 18859	1462 bp upstream
Tssr25158	transcription start site region 25158	1514 bp downstream