rs27404830 SNP Detail

Summary

• ID
  rs27404830
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105684149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCTATC AACAGATGTG
  TTCAAGGACA CAAGAGAAGC TAATTTCACT GCAAAGAAGA ATGAAATCAT GACTTTCAGC
  CTGTTTTTAA CCTAGCAGAG ATTTTCAAAC AAACTTTTGA ATAAATGTTT CATTATAAAG
  GCACCTAATT TCCTAAATAT ATCATAATTT GAAAAGATGG ATGTGATAAA GTAAGGCTAC
  S
  TTCTGCAGCT GTCAGTTTAC AATGAAGAAG GTAACATTCT GAATGGCCTG GCCACTGAAG
  CCTTCCAGCC CTGGCTGAAG AAGGAACCTG CTCCTGTTTG GGTTAATCTT TATGCATCAC
  AAACTGTCCC AGTCCAAGGA TTTACTCTAT GGCCCTGGAT GGTGTGCTAC TTTCTCCTTT
  CATAGCATCG CATACTTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37615654	NES09063354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27404830					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615654	NES09063354	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105684149 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr562298	regulatory region 562298	978 bp proximal