rs27412720 SNP Detail

Summary

• ID
  rs27412720
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128552553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATCAACAG GAGGTGAAGT GGTGTGTTTT TAGTTGTTTG
  TTTTGTTTTT CAAGACTGAC TTTCCCTTTA TAACCCTGGC TGAGATTAAA GGCGTGTGCT
  W
  CCACCGCCCA GCTAGTAAGG TGAGCTTTAA ACTCATCTAC AAAACGTTTG CAAAGCCCAA
  CTGCGCAGGG CAGCCCAGGA CCTATGGACT CTGCCTTTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37624439	NES09004201	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	A	T	A	T	T	T	T	T	A	T
ss147568470	ENSMUSSNP7011848	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412720					SNP	T	T	T	T	T	T	A	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37624439	NES09004201	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128552553 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	1390 bp distal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	1503 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr1768	regulatory region 1768	1542 bp upstream
Rr58326	regulatory region 58326	within coordinates
Tssr20064	transcription start site region 20064	1899 bp downstream
Tssr20065	transcription start site region 20065	1850 bp downstream
Tssr20066	transcription start site region 20066	1568 bp downstream
Tssr20067	transcription start site region 20067	1526 bp downstream