rs27412727 SNP Detail

Summary

• ID
  rs27412727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128551378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTCATTAG ACACACAAAG GAAAGCCTTG TTTGTTTTGG
  AGAAAATGTT GCTTTGCTAT CTTAAGCCTC AGGGCTTCTA GTTAAAGCTA CTAACCGCAG
  R
  CCGGCCTCCT TTATGGCTTT GATGAGGAGT TTCACAAGCA AGAACAGGCT GTCTTTGTGG
  CGAATATTAG AACGGGCTCA CACTAGCTGA AGTTGCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37624446	NES09004194	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G		A	G	A	A	A	A	A	G	A
ss45370148	mCV23914753	ABI	CRAMUS_MOUSE	f	SNP		A					A		G
ss147568422	ENSMUSSNP6011452	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27412727					SNP	A	A	A	A	A	G	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37624446	NES09004194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128551378 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	215 bp distal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	328 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr58325	regulatory region 58325	1978 bp distal
Rr58326	regulatory region 58326	within coordinates
Tssr20064	transcription start site region 20064	724 bp downstream
Tssr20065	transcription start site region 20065	675 bp downstream
Tssr20066	transcription start site region 20066	393 bp downstream
Tssr20067	transcription start site region 20067	351 bp downstream