rs27413285 SNP Detail

Summary

• ID
  rs27413285
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97063330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTGGA TTTTTTTTTT
  AATGTCAATA GGATAGGTCA TGAGAATATA GATCACTTAA GAAGCAGGAC TTTGGTCTCT
  CGCTTGTTTG TGGAAGGAAT TCACAGATGT GCAGAGTTTG TTATTTTTAA TAAGCACCCA
  GAGAAGCATC ACTTTAGAGG TCACATGATG TGGGTTTGTT CTTCATGTGA CACCTGCCGC
  W
  CTGAATTCTC CATGATGCGG GTGCATTTTT TTCTGATGTC AGTCTGGGGA TACTTTCACA
  ACTTTGTTTT TCTAGTAGCC ATATGGAGCT TGTACATGCC CAGTCTCAAG GTTTGACAGA
  GCATTTCACT GGATGGTAGA AGCAGGGACA TGCTGTTCAC CTAAGTGCTG TCAGTTTTGG
  CATTAACGTG TAGAGTTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37589318	NES09084205	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	A		T	T	A		T
ss45213402	mCV24368818	ABI	CRAMUS_MOUSE	f	SNP	A	T				T
ss146991569	ENSMUSSNP6314273	ENSEMBL	ENSEMBL_Sanger	f	SNP						T
ss320412931	CHEV_2_97073142	CHEVERUD	SCREENING_POP	f	SNP									A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27413285					SNP	A	T	T	T	T	T	T	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37589318	NES09084205	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97063330 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561442	regulatory region 561442	within coordinates