rs27413289 SNP Detail

Summary

• ID
  rs27413289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97062276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATATCAC ACAAGTACTT
  TGGTGAGTTT CTCTCTATAA AGACACAACA AACAATGATC AGCAAAGAAG GCAAGATGAA
  CCAATATGAC AGCATTGTCA GCTAAAATCA GTACCAGCAA AACCCAAAGA AGACCATCAA
  AGAGTGCAAG ATGAATGAAT GCCACAATAT TGTCCATTGG TCCACTGTCT ATAGGGCTAT
  R
  CTTAAACTCT TTCCAAACTT CAAGTGTCCC CTCAAGCATG TGCAACAGAA AAACACTACA
  TGCCCTTTAC CCAGGTAACT TCCAGAACAA AGCTGCATCT GTTTTCAGCA AAACATCCTC
  CCACATTTCT GCTACAACAA AACATCCTCT CCTAGACAGT CTCCTTAAAA ACACCACATG
  ACCCAATTGA AGAAACGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37589322	NES09084201	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27413289					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37589322	NES09084201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97062276 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561442	regulatory region 561442	996 bp proximal