rs27413290 SNP Detail

Summary

• ID
  rs27413290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97062242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTGAGT CCAGAGAATT
  GGCAAGATGC TGCAGGAATA TCACACAAGT ACTTTGGTGA GTTTCTCTCT ATAAAGACAC
  AACAAACAAT GATCAGCAAA GAAGGCAAGA TGAACCAATA TGACAGCATT GTCAGCTAAA
  ATCAGTACCA GCAAAACCCA AAGAAGACCA TCAAAGAGTG CAAGATGAAT GAATGCCACA
  R
  TATTGTCCAT TGGTCCACTG TCTATAGGGC TATACTTAAA CTCTTTCCAA ACTTCAAGTG
  TCCCCTCAAG CATGTGCAAC AGAAAAACAC TACATGCCCT TTACCCAGGT AACTTCCAGA
  ACAAAGCTGC ATCTGTTTTC AGCAAAACAT CCTCCCACAT TTCTGCTACA ACAAAACATC
  CTCTCCTAGA CAGTCTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37589323	NES09084200	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27413290					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37589323	NES09084200	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97062242 () rs orientation: forward

Symbol	Name	Function Class
Lrrc4c	leucine rich repeat containing 4C	Intron
Rr561442	regulatory region 561442	1030 bp proximal