rs27413294 SNP Detail

Summary

• ID
  rs27413294
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97061904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAAGAT ATGTGCATGC
  ATAGAAGTAA TCATACAATT TTTATTGAAC ATGTCACATT TTACATCTAA GATAAAGAGA
  TACATAATGT AGATGCTTTA TCTAGTCAGC TGTTGGCTTT GATATTTTTG AAAATCTACT
  TTAAAATGGG TTCTAAAACA CTTGAATCTT CCTTTTAGCT CACCACTCAC CAGAGGCAGT
  K
  AAAAAGAAAA CTTAACAGGG TAAAGGATGT GGACCTGTTT AGACAAATCA GCAGCCATAG
  CTCAATCCAC TAGCAAACAC CATTCATGAA TCAGCAACTG CAGTTTGATC CAGAAGAAAC
  CTCCAGGCTC TGACTATTGG CCTGAGTCCA GAGAATTGGC AAGATGCTGC AGGAATATCA
  CACAAGTACT TTGGTGAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37589327	NES09084196	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	G	G	G		G	G	G		G
ss146991544	ENSMUSSNP7061278	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				G
ss320412926	CHEV_2_97071716	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27413294					SNP	T	T	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37589327	NES09084196	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97061904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561442	regulatory region 561442			1368 bp proximal