rs27416391 SNP Detail

Summary

• ID
  rs27416391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126922433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCACCGAA TTGGACTTTG GCACAGTTGT ACTTTGGTGT
  GCCCAGGGCT CCCTTTGGGG GTGTAGATGT CTGTATATCA CTTATCTGCC TATCACACCA
  Y
  GGTTTCCTCT TCTTAGCTCC CCCTTACAGT GTTGACATCT AAAGCCAGCG TGAAAACTGT
  ATCCATAGAG AGTTCGCGCC CCAAGATCCC GAACCTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630517	NES09015135	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	T	C	C	C	C	C	C	C
ss45309572	mCV23164710	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss147518865	ENSMUSSNP3523740	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27416391					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630517	NES09015135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126922433 () rs orientation: forward

Symbol	Name	Function Class
Blvra	biliverdin reductase A	within coordinates
Rr38146	regulatory region 38146	1568 bp proximal
Rr55562	regulatory region 55562	within coordinates
Tssr19977	transcription start site region 19977	1588 bp downstream
Tssr19978	transcription start site region 19978	302 bp downstream
Tssr19979	transcription start site region 19979	265 bp downstream
Tssr19980	transcription start site region 19980	251 bp downstream
Tssr19981	transcription start site region 19981	16 bp downstream
Tssr19982	transcription start site region 19982	within coordinates
Tssr19983	transcription start site region 19983	56 bp upstream
Tssr19984	transcription start site region 19984	1043 bp upstream