rs27416392 SNP Detail

Summary

• ID
  rs27416392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126922428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAGGCT GCACCTGTGT
  TGTTGATTAC TTCTGCTCCT TGTAGTTAGC ACCTCGCTCA TACTTCTGTT GGTGAGTTTT
  AAGTGACTCA GTTAAATACT TGCTGCATCA CCGAATTGGA CTTTGGCACA GTTGTACTTT
  GGTGTGCCCA GGGCTCCCTT TGGGGGTGTA GATGTCTGTA TATCACTTAT CTGCCTATCA
  Y
  ACCACGGTTT CCTCTTCTTA GCTCCCCCTT ACAGTGTTGA CATCTAAAGC CAGCGTGAAA
  ACTGTATCCA TAGAGAGTTC GCGCCCCAAG ATCCCGAACC TCTCTCTCTC TTCACGGACA
  CTGACTGAAG AGGCCAAGAT GAGTACTGAG GTGAGCTGCC CTCAGGGGCT GTAAGGGACA
  CCTTTGCTGC AGTTTCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630518	NES09015133	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27416392					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630518	NES09015133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126922428 () rs orientation: forward

Symbol	Name	Function Class
Blvra	biliverdin reductase A	within coordinates
Rr38146	regulatory region 38146	1573 bp proximal
Rr55562	regulatory region 55562	within coordinates
Tssr19977	transcription start site region 19977	1583 bp downstream
Tssr19978	transcription start site region 19978	297 bp downstream
Tssr19979	transcription start site region 19979	260 bp downstream
Tssr19980	transcription start site region 19980	246 bp downstream
Tssr19981	transcription start site region 19981	11 bp downstream
Tssr19982	transcription start site region 19982	3 bp upstream
Tssr19983	transcription start site region 19983	61 bp upstream
Tssr19984	transcription start site region 19984	1048 bp upstream