rs27416393 SNP Detail

Summary

• ID
  rs27416393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126922033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCAAG TGCTGGGATT
  AAAGGCGTGC ACCACACCAC CTAGCATTTA GCTTTCTTAG ACAGCCTATG TCTACCTGCA
  TAGGGATGGC ACTGCCCACA GTGGAGGGAC TGTAGCAATT AGCAATGAAG AAAACGCCCT
  GTGACATGGT CATGGCAAAT CTGATCTGGG GACCTCAGCT GACGTTCCTG TTCGGAGGCA
  W
  GTTCTCCAAA TTGCAACATT TCCTCCAAGG GGGAAGAAAA AGAGTCACAA GGCAAATAAA
  ATGTTAACAA TGTGGGAGAA AACAGGAACT TTGAAATATT CTTGAGGGCA GTGGAAAAAG
  GGGGAAAATA GTTTGTGATC AGCCACACTG CGAAAAGAAA TTATTAACTC ACGGTCCACT
  GCAAGCTGTG TGTGTCTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37630519	NES09015156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27416393					SNP	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37630519	NES09015156	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126922033 () rs orientation: forward

Symbol	Name	Function Class
Blvra	biliverdin reductase A	within coordinates
Rr38146	regulatory region 38146	1968 bp proximal
Rr55562	regulatory region 55562	367 bp proximal
Tssr19977	transcription start site region 19977	1188 bp downstream
Tssr19978	transcription start site region 19978	79 bp upstream
Tssr19979	transcription start site region 19979	124 bp upstream
Tssr19980	transcription start site region 19980	139 bp upstream
Tssr19981	transcription start site region 19981	356 bp upstream
Tssr19982	transcription start site region 19982	398 bp upstream
Tssr19983	transcription start site region 19983	456 bp upstream
Tssr19984	transcription start site region 19984	1443 bp upstream