rs27418240 SNP Detail

Summary

• ID
  rs27418240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127432469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAGGACC AGCAAGGACG GCAGGGGGTG CAGGTGACAT
  CAAGGGACTT TCACGAGGCT TGGAAACTGC ATGGGTTTGA GGGTGAAAGG TGGAGATGAG
  R
  CGCCATGTCG GCGTGGAGCC TAGAGATGGC TTACATATTG TCTTAATCTT TCTGTTTTGT
  AGGTTCCAAT ATCTTACTGG TTAAAATGCT CCGTCTCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37628562	NES09012904	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	A	A	G	G	G	G	G	G	G
ss147535489	ENSMUSSNP6141984	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27418240					SNP	G	G	G	G	G	G	A	A	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628562	NES09012904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127432469 () rs orientation: forward

Symbol	Name	Function Class
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564567	regulatory region 564567	1956 bp distal
Rr564568	regulatory region 564568	within coordinates
Tssr20027	transcription start site region 20027	180 bp downstream
Tssr20028	transcription start site region 20028	193 bp upstream