rs27418245 SNP Detail

Summary

• ID
  rs27418245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGGTATGT GACTTGAGCC TTCGTTTGTT TTGCCGGCGT
  TGAAACCATC TCATTAAGGC CTCTGTCCAT AGTAAGTTGT AACATTCACT AGCGCTCGCA
  R
  GTGATCTATC TAAAGTGTAC ACTTCAAAGG TTTTGTTTTA GTGTTTTTGT AGACGGTGCA
  TTTATCATCA CAGTCAGTTT GAGAACATTT TCATCACTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37628567	NES09012996	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A		G	G	G	G	A	G
ss147535320	ENSMUSSNP5005715	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27418245					SNP	G	G	G	G	G	A	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37628567	NES09012996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	126 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1067 bp distal
Rr564564	regulatory region 564564	918 bp distal
Rr564565	regulatory region 564565	40 bp distal
Rr564566	regulatory region 564566	569 bp distal
Rr564567	regulatory region 564567	177 bp proximal
Rr564568	regulatory region 564568	1924 bp proximal
Tssr20024	transcription start site region 20024	887 bp downstream
Tssr20025	transcription start site region 20025	871 bp downstream
Tssr20026	transcription start site region 20026	720 bp downstream
Zfp661	zinc finger protein 661	1056 bp upstream