rs27420406 SNP Detail

Summary

• ID
  rs27420406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125994419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGAGCAC CGATCTGTAA TTCAGGCTTT GGCGTGGTTT
  CGGCATGGTC GCGGGAAAAG GAAACCAGAT GTGTGCTGTT ACCGTCAGCC GATAAGCAGA
  Y
  GCGTTTCTTG TGTGTCTATT TCTTGGGAAT GTGAGACAAG TATAGTAACA CTTTGCGTTG
  CTAGTTCCAC GAGGTTGGGT AAGGATGAAG AGCCCAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37632626	NES09013363	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	T	C	C	C	C	T	C
ss147495601	ENSMUSSNP2525062	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27420406					SNP	C	C	C	C	C	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37632626	NES09013363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125994419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	within coordinates
Dtwd1	DTW domain containing 1	within coordinates
Fam227b	family with sequence similarity 227, member B	495 bp upstream
Rr367293	regulatory region 367293	413 bp downstream
Rr564315	regulatory region 564315	506 bp distal
Rr564316	regulatory region 564316	348 bp distal
Rr564317	regulatory region 564317	352 bp distal
Rr564318	regulatory region 564318	within coordinates
Tssr19931	transcription start site region 19931	353 bp downstream
Tssr19932	transcription start site region 19932	287 bp downstream
Tssr26028	transcription start site region 26028	538 bp upstream
Tssr26029	transcription start site region 26029	490 bp upstream
Tssr26030	transcription start site region 26030	457 bp upstream