rs27420407 SNP Detail

Summary

• ID
  rs27420407
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125993985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACAACGG GCGGCACAGC AGGAAGCTGA CGGTTCCTTT
  GGAACAGGTC ACCCGGGAAG CGAAGGCGGG ACTTCCGAAC CAGTTCCTCC TGCTCGCCCA
  S
  GGGATTCTCC CTCTGAGCAT GCGCCGTGGT CAGCTTCCCC GTGGCCCTGG CAACCGCCAG
  GCCCCGCCCT CCGGTGTTCT GCGGAAAGCG CTCCGGGGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37632627	NES09013362	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27420407					SNP	C	C	C	C	C	G	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37632627	NES09013362	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125993985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	within coordinates
Dtwd1	DTW domain containing 1	76 bp upstream
Fam227b	family with sequence similarity 227, member B	61 bp upstream
Rr367293	regulatory region 367293	within coordinates
Rr564315	regulatory region 564315	72 bp distal
Rr564316	regulatory region 564316	within coordinates
Rr564317	regulatory region 564317	61 bp proximal
Rr564318	regulatory region 564318	87 bp proximal
Tssr19931	transcription start site region 19931	66 bp upstream
Tssr19932	transcription start site region 19932	100 bp upstream
Tssr26028	transcription start site region 26028	104 bp upstream
Tssr26029	transcription start site region 26029	56 bp upstream
Tssr26030	transcription start site region 26030	23 bp upstream