rs27420408 SNP Detail

Summary

• ID
  rs27420408
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125993857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACAGTAG GTGTCAACTC
  TGCGTGTTGT AAGCAAAGCA CAAAATGCAT AAACGGTTTT CCTAAGAAGT CTATCAAGCT
  TGAACTACCA ACCACCTAAA GCTACAAGTC TGAGATCTCG TAAATATAGT ATTTGGGGAG
  GTAAAGCGGT GTTACTAGCT CCTCACTAAC TCACAGAAAC TACTTTCGAA AAGGCTGTTC
  S
  GGAACACGTC CCCAGTTGCG CTGGGGGCCC ACAACGGGCG GCACAGCAGG AAGCTGACGG
  TTCCTTTGGA ACAGGTCACC CGGGAAGCGA AGGCGGGACT TCCGAACCAG TTCCTCCTGC
  TCGCCCACGG GATTCTCCCT CTGAGCATGC GCCGTGGTCA GCTTCCCCGT GGCCCTGGCA
  ACCGCCAGGC CCCGCCCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37632628	NES09013361	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27420408					SNP	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37632628	NES09013361	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125993857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	within coordinates
Dtwd1	DTW domain containing 1	204 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	40 bp upstream
Rr564315	regulatory region 564315	within coordinates
Rr564316	regulatory region 564316	57 bp proximal
Rr564317	regulatory region 564317	189 bp proximal
Rr564318	regulatory region 564318	215 bp proximal
Tssr19931	transcription start site region 19931	194 bp upstream
Tssr19932	transcription start site region 19932	228 bp upstream
Tssr26028	transcription start site region 26028	19 bp downstream
Tssr26029	transcription start site region 26029	31 bp downstream
Tssr26030	transcription start site region 26030	78 bp downstream