rs27423735 SNP Detail

Summary

• ID
  rs27423735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119167467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGCACG TCCACACCAC
  CCGGCTAGGC TATATTGCCA GATGGTCAGA GAAGAGCCCT GGAGGGGTCC TGGTGGCTCT
  CTCAATCCAT TTTACCACCT CTGATACCCT AGCCAAGGAG CTGAGAGAGA GCCCAACATA
  TGAACACTGC CTTCTGGTGC AAGTTGGAAC TCAGAGCAAG GGACTTAGTG TGGAATGCTT
  R
  TAGGGGCTCC AACCTGCGCC CACGCCACAC CCTCTTCCCA GCAACTCAGA TGTGGGCCCA
  GTTTTTACAT GGAGTGTGAA CAAAATATAT TCTTTTTCCC AGAAATTCCC GAAGGTCTCT
  CCTTGAGAGG CCACACACCC CCATCACAGA GGTAGGGTAC TTAATGGTCT CTTGATCACT
  CCAAGAGTCC AGGAGACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650658	NES09022225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27423735					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650658	NES09022225	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119167467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12118	CpG island 12118	545 bp proximal
Dll4	delta like canonical Notch ligand 4	1322 bp downstream
Rr397227	regulatory region 397227	1040 bp upstream
Rr563487	regulatory region 563487	within coordinates
Rr563488	regulatory region 563488	320 bp proximal
Rr563489	regulatory region 563489	680 bp proximal
Rr563490	regulatory region 563490	1173 bp proximal