rs27423740 SNP Detail

Summary

• ID
  rs27423740
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119166847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGGTGCT GATTCTCTCT CTGCAGCCAC CAATGTCACC
  CCATGTCAAG CAAATTGAGA GAAACAGCAG CAACCACCAC CCAAAGCCAG TGAGAAGCTA
  K
  GCAGAGGCTC CTAGTCAGTC CACAGTAAAG CAAAAGCAGA CCCAACAGAT GCCTTTCTCT
  TAGTGGAATC CAACTTCAGG AGGCAAACTA CTCCCCAACC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650663	NES09022212	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27423740					SNP	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650663	NES09022212	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119166847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12118	CpG island 12118	1165 bp proximal
Dll4	delta like canonical Notch ligand 4	702 bp downstream
Rr397227	regulatory region 397227	1660 bp upstream