rs27423741 SNP Detail

Summary

• ID
  rs27423741
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119166324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GTCTTTGGGT AGCCTGGCCT
  K
  GGCCTCCTGT GCCTGGTGAC TTTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650664	NES09022209	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	G	T		G	G	T		G
ss45287117	mCV22548562	ABI	CRAMUS_MOUSE	f	SNP		G					T		G
ss147329738	ENSMUSSNP2546433	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320474891	CHEV_2_119161579	CHEVERUD	SCREENING_POP	f	SNP												T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423741					SNP	G	G	G	G	G	G	T	G	G	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650664	NES09022209	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119166324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12118	CpG island 12118	1688 bp proximal
Dll4	delta like canonical Notch ligand 4	179 bp downstream
Rr563487	regulatory region 563487	210 bp proximal
Rr563488	regulatory region 563488	1463 bp proximal
Rr563489	regulatory region 563489	1823 bp proximal