rs27423751 SNP Detail

Summary

• ID
  rs27423751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119162030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT GATAGAGCTC TGTACCTTGA
  R
  GCCTCATCTT CCCCGACATT CACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650674	NES09022314	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G		G	G	G	A		G	G	A		G
ss45284694	mCV22548336	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss147329639	ENSMUSSNP431286	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss320474871	CHEV_2_119157285	CHEVERUD	SCREENING_POP	f	SNP													A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423751					SNP	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650674	NES09022314	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119162030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12117	CpG island 12117	679 bp proximal
Dll4	delta like canonical Notch ligand 4	within coordinates
Rr55451	regulatory region 55451	570 bp proximal
Tssr19626	transcription start site region 19626	1783 bp downstream