rs27423753 SNP Detail

Summary

• ID
  rs27423753
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119161915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC TTATTCCATG GGTGAGCCTC
  K
  GCCTGACAAG GCTAGCTTGT GCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650676	NES09022312	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	T		G	G	G		G
ss45278285	mCV22548335	ABI	CRAMUS_MOUSE	f	SNP		G	G					T	G
ss147329634	ENSMUSSNP800246	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320474870	CHEV_2_119157170	CHEVERUD	SCREENING_POP	f	SNP												T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423753					SNP	G	G	G	G	G	G	G	T	G	G	T	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650676	NES09022312	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119161915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12117	CpG island 12117	794 bp proximal
Dll4	delta like canonical Notch ligand 4	within coordinates
Rr55450	regulatory region 55450	1914 bp distal
Rr55451	regulatory region 55451	685 bp proximal
Tssr19626	transcription start site region 19626	1668 bp downstream