rs27423761 SNP Detail

Summary

• ID
  rs27423761
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119160978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT TCACAGGCAG AGAAAGGAGG
  K
  ATGCCTGGGC CTGGAAAACT TATGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650684	NES09022286	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T	T	T	G		G	T	T	G		T
ss45338623	mCV22548311	ABI	CRAMUS_MOUSE	f	SNP							G		T
ss147329598	ENSMUSSNP5234610	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
ss320474866	CHEV_2_119156233	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423761					SNP	T	T	T	T	T	T	G	T	T	T	G	G	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650684	NES09022286	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119160978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12117	CpG island 12117	1731 bp proximal
D2Dcr63	DNA Segment, Chr 2, Derry C. Roopenian 63	1487 bp distal
D2Mit104	DNA segment, Chr 2, Massachusetts Institute of Technology 104	1488 bp distal
Dll4	delta like canonical Notch ligand 4	within coordinates
Rr55450	regulatory region 55450	977 bp distal
Rr55451	regulatory region 55451	1622 bp proximal
Tssr19626	transcription start site region 19626	731 bp downstream