rs27423763 SNP Detail

Summary

• ID
  rs27423763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119159241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGTTAC TGCAGCAAGC
  CAGATGAGTG CATGTAAGTG GGGACAGGAA ACGGGAGTAG GGGGGCTCTC CCTTGTGAGC
  AGGTCTCCCA TCTTACACTG GGCTCCCCTC TTGTCTTAAC AGCTGCCGTC CAGGTTGGCA
  GGGTCGCCTG TGCAATGAAT GTATCCCCCA CAATGGCTGT CGTCATGGCA CCTGCAGCAT
  Y
  CCCTGGCAGT GTGCCTGCGA TGAGGGATGG GGAGGTCTGT TTTGTGACCA AGGTGAGTAA
  GGGAAGGAGA GATGGGGTGG CAGGGCCTGA AACTAGAGAT GGTGACTGGA CACCTTTCTT
  GGTGGTCAGT AACTGACTTT CCTATTATTC TATTATTGTT CAAGGACAAG TCTCAGGACT
  TGTCTATGTG CACATGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37650686	NES09022368	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27423763					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650686	NES09022368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119159241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12116	CpG island 12116	1267 bp distal
D2Dcr63	DNA Segment, Chr 2, Derry C. Roopenian 63	131 bp proximal
D2Mit104	DNA segment, Chr 2, Massachusetts Institute of Technology 104	102 bp proximal
Dll4	delta like canonical Notch ligand 4	within coordinates
Rr393	regulatory region 393	1238 bp distal
Rr55450	regulatory region 55450	within coordinates
Tssr19626	transcription start site region 19626	989 bp upstream