rs27423788 SNP Detail

Summary

• ID
  rs27423788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118495610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT TTCTGGCTCT GGGCTTGTTT
  Y
  TACAGTCCCT GCCTTTGCTT CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652426	NES09029015	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T	T	T	C		C	T	T	C		T
ss147308931	ENSMUSSNP1131672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						T
ss320471136	CHEV_2_118490865	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423788					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652426	NES09029015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118495610 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	1576 bp distal
Gm75659	predicted gene, 75659	1138 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	9 bp distal
Tssr19565	transcription start site region 19565	1820 bp downstream
Tssr19566	transcription start site region 19566	1801 bp downstream
Tssr19567	transcription start site region 19567	1367 bp downstream