rs27423790 SNP Detail

Summary

• ID
  rs27423790
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118494497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCGCTCA CCTCTCAAGG GGATCTTTCT GTAAAAGGAA
  ACGTGTGGCT TCCAGGGTCA CTGGTATTTG GAGAGCAAGA CTGGATTGGC ATAGGCAGGC
  M
  TGTGCAGGTA GGTGGCTCTG TACTGGGTGT GGACCCACGT GTGTGAGAGG GTGAGGGTGT
  GTCACAGTGC GTATGCGCCC AGCCAGATCT GAGGACAGCC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652433	NES09029008	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27423790					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652433	NES09029008	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118494497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	463 bp distal
Gm75659	predicted gene, 75659	25 bp upstream
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Tssr19565	transcription start site region 19565	707 bp downstream
Tssr19566	transcription start site region 19566	688 bp downstream
Tssr19567	transcription start site region 19567	254 bp downstream