rs27423794 SNP Detail

Summary

• ID
  rs27423794
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118493900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATCACC CTCCTCCCCA
  TGGCAACCCC CGACGATATC AAAATTGCCA GGCAACGTTG GAGCTGCTCG CGCCCTACAG
  GAGCAGGTCG CTGCCTGAGA TTCTAATGGA GAAATCCCAA AGTGAGCTGG GGTGCACGGT
  GGAGGAGGGG TGCGCCGCGG CCGGGGCTGC CGGGCCCTGA TCGATTGACC AGAGGAAGGC
  S
  GGAGCGGTTG TCGCTTGCTC CGCAGCTTGA ACACACCGGG GGCTCCACGG CCAGCTCTTC
  CTGACAGCAG CGGCAGACCA CAGCAGGTGG GGGGAGGGCA CTGCTCGGTT CCTGACATGC
  CGGGAGCAGC AAGCAGCCAT CCAGGTGACT AAGCCGGCCC ACCGCCACTG AGTCACCCAC
  CCACCCTGGC TTTTCTTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652438	NES09029003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27423794					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652438	NES09029003	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118493900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12085	CpG island 12085	within coordinates
Gm75659	predicted gene, 75659	within coordinates
Pak6	p21 (RAC1) activated kinase 6	within coordinates
Rr55423	regulatory region 55423	within coordinates
Tssr19565	transcription start site region 19565	110 bp downstream
Tssr19566	transcription start site region 19566	91 bp downstream
Tssr19567	transcription start site region 19567	303 bp upstream