rs27423885 SNP Detail

Summary

• ID
  rs27423885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118429775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GATGAGATGG CACTTGGGTC
  Y
  GAACTAGAAG GAACTAGTCA CGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652589	NES09017908	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		T	C	T		C
ss147306172	ENSMUSSNP1066305	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320470632	CHEV_2_118425030	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27423885					SNP	C	C	C	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652589	NES09017908	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118429775 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12084	CpG island 12084	664 bp distal
Rr397211	regulatory region 397211	957 bp downstream
Rr563273	regulatory region 563273	1073 bp distal
Rr563274	regulatory region 563274	522 bp distal
Rr563275	regulatory region 563275	within coordinates
Tssr19562	transcription start site region 19562	1068 bp downstream
Tssr19563	transcription start site region 19563	1027 bp downstream
Tssr19564	transcription start site region 19564	994 bp downstream