rs27423889 SNP Detail

Summary

• ID
  rs27423889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118429605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAG CAAGAGAAGA CGGCATTGGA
  R
  GTAGAACTAG TGTGGTTTCA GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37652593	NES09017904	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		G		G	A	G
ss147306142	ENSMUSSNP5024182	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss320470626	CHEV_2_118424860	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27423889					SNP	A	A	A	A	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652593	NES09017904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118429605 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12084	CpG island 12084	494 bp distal
Rr397211	regulatory region 397211	787 bp downstream
Rr563273	regulatory region 563273	903 bp distal
Rr563274	regulatory region 563274	352 bp distal
Rr563275	regulatory region 563275	within coordinates
Tssr19562	transcription start site region 19562	898 bp downstream
Tssr19563	transcription start site region 19563	857 bp downstream
Tssr19564	transcription start site region 19564	824 bp downstream