rs27423901 SNP Detail

Summary

• ID
  rs27423901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118428094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTA CCAAGCCTTT AGCTCCAGTG
  M
  GACAGGCAAA GCGCTTACCC TGTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37652605	NES09017937	PERLEGEN	MM_PANEL2	f	SNP			C		A		A	A
ss147306011	ENSMUSSNP1892474	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320470603	CHEV_2_118423349	CHEVERUD	SCREENING_POP	f	SNP						A			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27423901					SNP	C	C	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652605	NES09017937	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118428094 () rs orientation: forward

Symbol	Name	Function Class
Bub1b	BUB1B, mitotic checkpoint serine/threonine kinase	598 bp upstream
Cpgi12084	CpG island 12084	412 bp proximal
Rr397211	regulatory region 397211	424 bp upstream
Rr563273	regulatory region 563273	108 bp proximal
Rr563274	regulatory region 563274	609 bp proximal
Rr563275	regulatory region 563275	1484 bp proximal
Tssr19562	transcription start site region 19562	596 bp upstream
Tssr19563	transcription start site region 19563	619 bp upstream
Tssr19564	transcription start site region 19564	658 bp upstream