rs27423907 SNP Detail

Summary

• ID
  rs27423907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118417027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAC CCTCTAACCT AAAAAAGGCA
  Y
  CAGGTCTGCC AGGTTGGGTT TGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37652612	NES09018082	PERLEGEN	MM_PANEL2	f	SNP			T			C		C	C
ss46449058	mCV22885666	ABI	CRAMUS_MOUSE	r	SNP	A	A		G	A
ss147305643	ENSMUSSNP3949031	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320470525	CHEV_2_118412282	CHEVERUD	SCREENING_POP	f	SNP							C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27423907					SNP	T	T	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652612	NES09018082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118417027 () rs orientation: forward

Symbol	Name	Function Class
Rr563272	regulatory region 563272	155 bp distal