rs27423908 SNP Detail

Summary

• ID
  rs27423908
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118416686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTGTCCA TTCTGTGGGC AGCAGAGCAG TGGAATAGGA
  GGGACCGAGG AGCCCTCCAA CCAGTAAGAC CAGCTGGGCC AGTTCTCCTT GGCCGTGGCA
  S
  TCTCAGTAAA ACAAACAAAT GAGAACAACT AGACATCAGA GAGTTATGTC TGGAGGGAGG
  AAGGGAATAC ATCCCAGGGG AGGAGGGATA CTGCGTGAGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652613	NES09018081	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27423908					SNP	C	G	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652613	NES09018081	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118416686 () rs orientation: forward

Symbol	Name	Function Class
Rr563272	regulatory region 563272	within coordinates