rs27424542 SNP Detail

Summary

• ID
  rs27424542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119729153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTCATGT TTGTGGCTAG CTGAAAAGCG AGTAACTGGA
  GGCTGTTTTA TTTTTTTATA CATAGGTAGT AAGTTGTGTC CACTTAACTG CAACACAAGT
  R
  AAAGACCTGA AATTTCATTC CCTGGGTGCA TTGGCATATT TATTTCAAAT TTGCTGTCCA
  TTTCTGCAGT AAAGGTTAGT TTTTCAGGTT CTACTTAGTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ
ss37649563	NES09023767	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ
rs27424542					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649563	NES09023767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119729153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930485G23Rik	RIKEN cDNA 4930485G23 gene			283 bp upstream
Cpgi12132	CpG island 12132			823 bp distal
Cpgi12133	CpG island 12133			144 bp distal
Gm75581	predicted gene, 75581			within coordinates
Gm75585	predicted gene, 75585			1515 bp upstream
Mga	MAX gene associated			Intron
				Noncoding-Transcript-Variant
Rr563600	regulatory region 563600			1526 bp distal
Rr563601	regulatory region 563601			1434 bp distal
Rr563602	regulatory region 563602			11 bp distal
Rr563603	regulatory region 563603			1563 bp proximal
Tssr19669	transcription start site region 19669			1380 bp downstream
Tssr19670	transcription start site region 19670			1081 bp downstream
Tssr25831	transcription start site region 25831			1515 bp upstream
Tssr25832	transcription start site region 25832			297 bp upstream