rs27424552 SNP Detail

Summary

• ID
  rs27424552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119725644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT TATGGGTATT GTACCTATTA
  R
  GGGATCTAAT GCTGCATCTT AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37649573	NES09023782	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G		A	G	G	A		G
ss45254985	mCV24941051	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss147345312	ENSMUSSNP237664	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320477916	CHEV_2_119720899	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27424552					SNP	G	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37649573	NES09023782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119725644 () rs orientation: forward

Symbol	Name	Function Class
4930485G23Rik	RIKEN cDNA 4930485G23 gene	within coordinates
Cpgi12132	CpG island 12132	1725 bp proximal
Gm75581	predicted gene, 75581	within coordinates
Gm75585	predicted gene, 75585	521 bp downstream
Rr563600	regulatory region 563600	1372 bp proximal
Rr563601	regulatory region 563601	1984 bp proximal
Tssr25831	transcription start site region 25831	1957 bp downstream