rs27425153 SNP Detail

Summary

• ID
  rs27425153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121380674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCATTTCT AGTAGAATGC
  CTGACCACCA CAGTTGTTCA CCAAGCATGT TAATGTTCTG TCCTCTCAAC AGAAGACTGC
  TTTAAGGTCA TTCAATATCA GGCCAGTCCT GAACAAGAAA ATGTAGCCAG CACCCCTCCC
  CATTTCTCCA CCCTCTCCCT TTTCCCTCCC TCCCTCCATC TCAAAACCTT TTTATGGATC
  Y
  ATTTTTATCT CTTGTTGTAT ATGAAATGTA TCTCATTCAA AATGTTATGT ATCCTTAAAT
  TATCCAGAAA TATCACCATA AACCTTTAGT ATTGATTATG GAGTAACATC CCACTTTAAA
  CGGTTTGTCT TGTATTTTAA ATCAAATACA TGGCTTTTGG GGTTTTTTTT GTAAGTTATC
  ATTTAGAAGA TTAGGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37645572	NES09016714	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C		C	C	C	C	C	C	C
ss45254203	mCV24430178	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				C		C
ss147390401	ENSMUSSNP1815867	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27425153					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645572	NES09016714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121380674 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	within coordinates
Rr563848	regulatory region 563848	1148 bp proximal
Tssr25942	transcription start site region 25942	572 bp upstream
Tssr25943	transcription start site region 25943	1071 bp downstream
Tssr25944	transcription start site region 25944	1084 bp downstream
Tssr25945	transcription start site region 25945	1160 bp downstream
Tssr25946	transcription start site region 25946	1190 bp downstream