rs27425154 SNP Detail

Summary

• ID
  rs27425154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121380472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA GCAGACAGGA GGATGGGCAG
  R
  CAGGCATTTC TAGTAGAATG CCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37645573	NES09016713	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		A	G	G	A		G
ss45358848	mCV24430169	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss147390386	ENSMUSSNP2978724	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss320483655	CHEV_2_121375727	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425154					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645573	NES09016713	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121380472 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	4 bp proximal
Rr563848	regulatory region 563848	1350 bp proximal
Tssr25942	transcription start site region 25942	370 bp upstream
Tssr25943	transcription start site region 25943	1273 bp downstream
Tssr25944	transcription start site region 25944	1286 bp downstream
Tssr25945	transcription start site region 25945	1362 bp downstream
Tssr25946	transcription start site region 25946	1392 bp downstream