rs27425155 SNP Detail

Summary

• ID
  rs27425155
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121380338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTATTTC CTGATGCGGC
  CGCTGGCACG CATGACAGAA ATACTTTCTG CGTCACTGAT GAAACAGAAC TCTTTAAGCC
  CTGTCTGTGG CCTGATCCTG GCACATGACA CCCTCTAAAA GGCCTGTCCC CTCACATGGA
  CATCTATGAC AGCCAGATCT CCCAAGTATG ACCAGCTTTG GTGCCAGCAG CCACTTCAGT
  R
  CAAAATATCT TGGCTTGTGA TTAATCCCTA AGCTGGCTGA GGAAGGAGAG TGAGGCTGAC
  ATCAGGACAT CGAGTCAGAA GCTATGGCAC CTACTAAGCT GTCCGTGAGC TCAGCAGACA
  GGAGGATGGG CAGACAGGCA TTTCTAGTAG AATGCCTGAC CACCACAGTT GTTCACCAAG
  CATGTTAATG TTCTGTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645574	NES09016712	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425155					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645574	NES09016712	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121380338 () rs orientation: forward

Symbol	Name	Function Class
Frmd5	FERM domain containing 5	within coordinates
Rr406973	regulatory region 406973	138 bp proximal
Rr563848	regulatory region 563848	1484 bp proximal
Tssr25942	transcription start site region 25942	236 bp upstream
Tssr25943	transcription start site region 25943	1407 bp downstream
Tssr25944	transcription start site region 25944	1420 bp downstream
Tssr25945	transcription start site region 25945	1496 bp downstream
Tssr25946	transcription start site region 25946	1526 bp downstream