rs27425660 SNP Detail

Summary

• ID
  rs27425660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121993668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC ATTCTCTCCT AAACACATAT
  R
  CATTCTCTCC TAACTCAAGG AGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss37644479	NES09019906	PERLEGEN	MM_PANEL2	f	SNP	G	A		A
ss320487288	CHEV_2_121988923	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs27425660					SNP	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644479	NES09019906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121993668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			560 bp downstream
Rr563920	regulatory region 563920			1276 bp distal
Rr563921	regulatory region 563921			393 bp proximal
Trim69	tripartite motif-containing 69			Intron
				Noncoding-Transcript-Variant
Tssr19832	transcription start site region 19832			1628 bp downstream