rs27425661 SNP Detail

Summary

• ID
  rs27425661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121992043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAGTATTC TAAACTTTAG TGTTGACAGA CAAAAGAAAA
  CATCGATTTA CTTTAAGGAA GCCGGGTTTC CACGGAAACC CATCAAGGAA TCTCAGTACA
  Y
  GGATCCGGAT GCCGAGTGGG TCAGAACCCA GAGGTACAGA TTTAGGATTT ACTTCTGTGA
  GGCTGAACAC GAAGTCAGGA AATTACTCAC TTGTTAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644480	NES09019948	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C		T	C	T		T	T	T	T		T
ss45341333	mCV24435068	ABI	CRAMUS_MOUSE	f	SNP	T	T	C				T		C
ss147410379	ENSMUSSNP6642246	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320487277	CHEV_2_121987298	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425661					SNP	T	T	C	C	T	C	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644480	NES09019948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121992043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Patl2	protein associated with topoisomerase II homolog 2 (yeast)			Intron
Rr373780	regulatory region 373780			within coordinates
Rr563917	regulatory region 563917			852 bp distal
Rr563918	regulatory region 563918			552 bp distal
Rr563919	regulatory region 563919			684 bp distal
Rr563920	regulatory region 563920			within coordinates
Trim69	tripartite motif-containing 69			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr626	transcription start site region 626			865 bp downstream
Tssr19830	transcription start site region 19830			869 bp downstream
Tssr19831	transcription start site region 19831			825 bp downstream
Tssr19832	transcription start site region 19832			3 bp downstream