rs27425664 SNP Detail

Summary

• ID
  rs27425664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121990703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGACGAG CGTCTAAGCT
  AAAAGTGCTT ACTTAGACTT TTAGAGAAAG CTGTGTGAAC AGCATCTTTC CCTGCTGCCT
  TAGGGTCCAG CTCCAGACCC TGCTACTTGA TCAGGTCTGC TTCAGGAGAT GCCAAGAAGA
  CAGGGAGAGC CAAACAGCTA CCCCTGAAAG GCTCTGTGTC TGGAGGTGAC GGGTCCAGCT
  R
  GGATAAAGAG AAGCCGCTCC AGTCAGGGGT ACAGCTGATG CTGCTGTTTG TTCTCTCTTC
  CCTCGAGCAG CCTCATTCCC AAGTGAGATC TGAAAACCTT AAAATTACAT TACCAGGGCT
  GGAGAGATGG CTCAGCCATT AAGAGTATTT ATGGTGCTTA CAGAGGACCA GAGTTTGGCT
  CCCAGTACTC ACATCAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644483	NES09019972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425664					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644483	NES09019972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121990703 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	1382 bp distal
Rr563917	regulatory region 563917	388 bp proximal
Rr563918	regulatory region 563918	489 bp proximal
Rr563919	regulatory region 563919	635 bp proximal
Rr563920	regulatory region 563920	1244 bp proximal
Trim69	tripartite motif-containing 69	486 bp upstream
Tssr626	transcription start site region 626	474 bp upstream
Tssr19830	transcription start site region 19830	461 bp upstream
Tssr19831	transcription start site region 19831	479 bp upstream
Tssr19832	transcription start site region 19832	1320 bp upstream