rs27425665 SNP Detail

Summary

• ID
  rs27425665
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121990677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA CAGCTACCCC TGAAAGGCTC
  K
  GTGTCTGGAG GTGACGGGTC CAGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37644484	NES09019971	PERLEGEN	MM_PANEL2	f	SNP	G		G		G	G	T		T	G	T
ss45267056	mCV24435042	ABI	CRAMUS_MOUSE	f	SNP		G		T		G
ss147410338	ENSMUSSNP5212138	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
ss320487269	CHEV_2_121985932	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27425665					SNP	G	G	G	T	G	G	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644484	NES09019971	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121990677 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	1356 bp distal
Rr563917	regulatory region 563917	414 bp proximal
Rr563918	regulatory region 563918	515 bp proximal
Rr563919	regulatory region 563919	661 bp proximal
Rr563920	regulatory region 563920	1270 bp proximal
Trim69	tripartite motif-containing 69	512 bp upstream
Tssr626	transcription start site region 626	500 bp upstream
Tssr19830	transcription start site region 19830	487 bp upstream
Tssr19831	transcription start site region 19831	505 bp upstream
Tssr19832	transcription start site region 19832	1346 bp upstream