rs27425666 SNP Detail

Summary

• ID
  rs27425666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121990475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCACAC AGCCTGCTCT
  GACTTCTCAG CAACTCTCTT GGCAGGAGGG GCAGCCTGTG CAAAGCCAGA GAAGCAAGGC
  ATTTGTGGGC AGTCTCTAAC TCTGGCATGC TGTTGTCCAT GCTAAGGCTG GATAGCAGGC
  AGACACTAAC CACTCAAGGC AATATACTGA GTTAGAATTA CTGTAAGCAA AACATCAAAC
  Y
  CGCGGGCTCC CAGACTTGAG CATGGTCTAG GGACGAGCGT CTAAGCTAAA AGTGCTTACT
  TAGACTTTTA GAGAAAGCTG TGTGAACAGC ATCTTTCCCT GCTGCCTTAG GGTCCAGCTC
  CAGACCCTGC TACTTGATCA GGTCTGCTTC AGGAGATGCC AAGAAGACAG GGAGAGCCAA
  ACAGCTACCC CTGAAAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644485	NES09019970	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425666					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644485	NES09019970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121990475 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	1154 bp distal
Rr563917	regulatory region 563917	616 bp proximal
Rr563918	regulatory region 563918	717 bp proximal
Rr563919	regulatory region 563919	863 bp proximal
Rr563920	regulatory region 563920	1472 bp proximal
Trim69	tripartite motif-containing 69	714 bp upstream
Tssr626	transcription start site region 626	702 bp upstream
Tssr19830	transcription start site region 19830	689 bp upstream
Tssr19831	transcription start site region 19831	707 bp upstream
Tssr19832	transcription start site region 19832	1548 bp upstream