rs27425696 SNP Detail

Summary

• ID
  rs27425696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121982872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGT GGTAGAAAAT CCAGCTTTTC
  R
  GTGAAATCCA GGGCCCTTGA GGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644515	NES09020125	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		G	G	A	G	G	A	A	G	A
ss45322361	mCV24434704	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss147410089	ENSMUSSNP5866777	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425696					SNP	A	A	G	A	G	A	G	G	G	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644515	NES09020125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121982872 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19810	transcription start site region 19810	1782 bp downstream
Tssr19811	transcription start site region 19811	1505 bp downstream
Tssr19812	transcription start site region 19812	1461 bp downstream
Tssr19813	transcription start site region 19813	1443 bp downstream
Tssr19814	transcription start site region 19814	1425 bp downstream
Tssr19815	transcription start site region 19815	1411 bp downstream
Tssr19816	transcription start site region 19816	1390 bp downstream
Tssr19817	transcription start site region 19817	1365 bp downstream
Tssr19818	transcription start site region 19818	1306 bp downstream
Tssr19819	transcription start site region 19819	1287 bp downstream
Tssr19820	transcription start site region 19820	217 bp upstream
Tssr19821	transcription start site region 19821	248 bp upstream
Tssr19822	transcription start site region 19822	360 bp upstream
Tssr19823	transcription start site region 19823	393 bp upstream
Tssr19824	transcription start site region 19824	448 bp upstream
Tssr19825	transcription start site region 19825	471 bp upstream
Tssr19826	transcription start site region 19826	511 bp upstream
Tssr19827	transcription start site region 19827	540 bp upstream
Tssr19828	transcription start site region 19828	577 bp upstream
Tssr19829	transcription start site region 19829	621 bp upstream
Tssr25955	transcription start site region 25955	1469 bp upstream
Tssr25956	transcription start site region 25956	1393 bp upstream
Tssr25957	transcription start site region 25957	1261 bp upstream
Tssr25958	transcription start site region 25958	471 bp downstream
Tssr25959	transcription start site region 25959	671 bp downstream