rs27425697 SNP Detail

Summary

• ID
  rs27425697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121982779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTCAGTC TCTAGTTGGT AGGCACTAGA TTTACCTTCT
  GGAGGCTTCC GGACACTCAG GGAAAGAAAT GGACAGGGTT GTAACTTCAT GTAAGGCACC
  R
  TCACTGATGT GTCAGAAGGA AGTTGAGGAG CGTGAGAGGG AACGTGGGTG TCTCTGTCAG
  GTGGAGTCTA GTGGTAGAAA ATCCAGCTTT TCGGTGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644516	NES09020119	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A		G	A	G	G		G	G	G	G		G
ss45275612	mCV24434697	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		A
ss147410085	ENSMUSSNP6625779	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320487218	CHEV_2_121978034	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425697					SNP	G	G	A	G	A	G	A	G	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644516	NES09020119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121982779 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19810	transcription start site region 19810	1689 bp downstream
Tssr19811	transcription start site region 19811	1412 bp downstream
Tssr19812	transcription start site region 19812	1368 bp downstream
Tssr19813	transcription start site region 19813	1350 bp downstream
Tssr19814	transcription start site region 19814	1332 bp downstream
Tssr19815	transcription start site region 19815	1318 bp downstream
Tssr19816	transcription start site region 19816	1297 bp downstream
Tssr19817	transcription start site region 19817	1272 bp downstream
Tssr19818	transcription start site region 19818	1213 bp downstream
Tssr19819	transcription start site region 19819	1194 bp downstream
Tssr19820	transcription start site region 19820	310 bp upstream
Tssr19821	transcription start site region 19821	341 bp upstream
Tssr19822	transcription start site region 19822	453 bp upstream
Tssr19823	transcription start site region 19823	486 bp upstream
Tssr19824	transcription start site region 19824	541 bp upstream
Tssr19825	transcription start site region 19825	564 bp upstream
Tssr19826	transcription start site region 19826	604 bp upstream
Tssr19827	transcription start site region 19827	633 bp upstream
Tssr19828	transcription start site region 19828	670 bp upstream
Tssr19829	transcription start site region 19829	714 bp upstream
Tssr25955	transcription start site region 25955	1376 bp upstream
Tssr25956	transcription start site region 25956	1300 bp upstream
Tssr25957	transcription start site region 25957	1168 bp upstream
Tssr25958	transcription start site region 25958	564 bp downstream
Tssr25959	transcription start site region 25959	764 bp downstream