rs27425699 SNP Detail

Summary

• ID
  rs27425699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121981668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACGGGAA AAAAATTCCT
  AAAGTAGAGA TGTCAGATAT GTCCTTCAGC AAGGACTGGT CTTTCTATAT CCTGGCTCAC
  ACTGAATTCA CCCCCACTGA GACTGATACA TACGCCTGCA GAGTTAAGCA TGCCAGTATG
  GCCGAGCCCA AGACCGTCTA CTGGGGTAAG CCTCAAGTTC TTCCTTACTT TCTGGACGCT
  Y
  CATCTGTGTG GACTTAAAAC TGCTTTGCTA TTTTAAAAAC CTGCATACTG AGATTGTTAG
  AGAATACCCC CAAAAGACTG ATCTGTGGTG CCAGCAGAGA CTTACACAGC AGGCCAGGAA
  CCAGCAGTTC CCTACCCACT GTCCCAGACT GCTTCCCTCT TTCCTGAGCT TCCTCCAGCT
  TTCCTGGCAG CCTGGTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644518	NES09020158	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425699					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644518	NES09020158	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121981668 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19808	transcription start site region 19808	1929 bp downstream
Tssr19809	transcription start site region 19809	1613 bp downstream
Tssr19810	transcription start site region 19810	578 bp downstream
Tssr19811	transcription start site region 19811	301 bp downstream
Tssr19812	transcription start site region 19812	257 bp downstream
Tssr19813	transcription start site region 19813	239 bp downstream
Tssr19814	transcription start site region 19814	221 bp downstream
Tssr19815	transcription start site region 19815	207 bp downstream
Tssr19816	transcription start site region 19816	186 bp downstream
Tssr19817	transcription start site region 19817	161 bp downstream
Tssr19818	transcription start site region 19818	102 bp downstream
Tssr19819	transcription start site region 19819	83 bp downstream
Tssr19820	transcription start site region 19820	1421 bp upstream
Tssr19821	transcription start site region 19821	1452 bp upstream
Tssr19822	transcription start site region 19822	1564 bp upstream
Tssr19823	transcription start site region 19823	1597 bp upstream
Tssr19824	transcription start site region 19824	1652 bp upstream
Tssr19825	transcription start site region 19825	1675 bp upstream
Tssr19826	transcription start site region 19826	1715 bp upstream
Tssr19827	transcription start site region 19827	1744 bp upstream
Tssr19828	transcription start site region 19828	1781 bp upstream
Tssr19829	transcription start site region 19829	1825 bp upstream
Tssr25955	transcription start site region 25955	265 bp upstream
Tssr25956	transcription start site region 25956	189 bp upstream
Tssr25957	transcription start site region 25957	57 bp upstream
Tssr25958	transcription start site region 25958	1675 bp downstream
Tssr25959	transcription start site region 25959	1875 bp downstream