rs27425700 SNP Detail

Summary

• ID
  rs27425700
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121981448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCCAGAG TAGAAATGGA
  ACAGGGAGAA ATAGAGGAAC AAATGTAAGA TGGTGCACGG TGCAGACTGA GCTCTGTTTT
  CATCTGTCTT CCCCTGTGGC CCTCAGAAAC CCCTCAAATT CAAGTATACT CACGCCACCC
  ACCGGAGAAT GGGAAGCCGA ACATACTGAA CTGCTACGTA ACACAGTTCC ACCCGCCTCA
  M
  ATTGAAATCC AAATGCTGAA GAACGGGAAA AAAATTCCTA AAGTAGAGAT GTCAGATATG
  TCCTTCAGCA AGGACTGGTC TTTCTATATC CTGGCTCACA CTGAATTCAC CCCCACTGAG
  ACTGATACAT ACGCCTGCAG AGTTAAGCAT GCCAGTATGG CCGAGCCCAA GACCGTCTAC
  TGGGGTAAGC CTCAAGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644520	NES09020156	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425700					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644520	NES09020156	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121981448 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19807	transcription start site region 19807	1783 bp downstream
Tssr19808	transcription start site region 19808	1709 bp downstream
Tssr19809	transcription start site region 19809	1393 bp downstream
Tssr19810	transcription start site region 19810	358 bp downstream
Tssr19811	transcription start site region 19811	81 bp downstream
Tssr19812	transcription start site region 19812	37 bp downstream
Tssr19813	transcription start site region 19813	19 bp downstream
Tssr19814	transcription start site region 19814	1 bp downstream
Tssr19815	transcription start site region 19815	6 bp upstream
Tssr19816	transcription start site region 19816	22 bp upstream
Tssr19817	transcription start site region 19817	45 bp upstream
Tssr19818	transcription start site region 19818	68 bp upstream
Tssr19819	transcription start site region 19819	125 bp upstream
Tssr19820	transcription start site region 19820	1641 bp upstream
Tssr19821	transcription start site region 19821	1672 bp upstream
Tssr19822	transcription start site region 19822	1784 bp upstream
Tssr19823	transcription start site region 19823	1817 bp upstream
Tssr19824	transcription start site region 19824	1872 bp upstream
Tssr19825	transcription start site region 19825	1895 bp upstream
Tssr19826	transcription start site region 19826	1935 bp upstream
Tssr19827	transcription start site region 19827	1964 bp upstream
Tssr25955	transcription start site region 25955	45 bp upstream
Tssr25956	transcription start site region 25956	20 bp downstream
Tssr25957	transcription start site region 25957	138 bp downstream
Tssr25958	transcription start site region 25958	1895 bp downstream