rs27425702 SNP Detail

Summary

• ID
  rs27425702
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTCAGAA TGCAAACTCT GGGCTGGAAC AGAGAAACCC
  TGGGTTGACT CGCATAGGAA CCTCATTAGG GAGGAGCCAA TGCTAACACC TGCCACCTGA
  R
  GGGTAATTGC TCAGCTCTCA GCACTGGATC AGACATATGT GTTGGGAAGT CTAGGGAGGA
  GCAATAAGCA AAAACGAAAG GGGATGAAAA TAAGAAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644522	NES09020154	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		A	G	G		G	G	G	G		G
ss45206842	mCV24434687	ABI	CRAMUS_MOUSE	f	SNP	G	A					G	A
ss147410064	ENSMUSSNP2901959	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss320487216	CHEV_2_121976119	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425702					SNP	G	A	G	A	G	A	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644522	NES09020154	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980864 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19807	transcription start site region 19807	1199 bp downstream
Tssr19808	transcription start site region 19808	1125 bp downstream
Tssr19809	transcription start site region 19809	809 bp downstream
Tssr19810	transcription start site region 19810	179 bp upstream
Tssr19811	transcription start site region 19811	492 bp upstream
Tssr19812	transcription start site region 19812	527 bp upstream
Tssr19813	transcription start site region 19813	551 bp upstream
Tssr19814	transcription start site region 19814	574 bp upstream
Tssr19815	transcription start site region 19815	590 bp upstream
Tssr19816	transcription start site region 19816	606 bp upstream
Tssr19817	transcription start site region 19817	629 bp upstream
Tssr19818	transcription start site region 19818	652 bp upstream
Tssr19819	transcription start site region 19819	709 bp upstream
Tssr25955	transcription start site region 25955	527 bp downstream
Tssr25956	transcription start site region 25956	604 bp downstream
Tssr25957	transcription start site region 25957	722 bp downstream