rs27425703 SNP Detail

Summary

• ID
  rs27425703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG TTTGGTTTCA GAATGCAAAC
  Y
  CTGGGCTGGA ACAGAGAAAC CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644523	NES09020153	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C	C	T		T	C	C	T		C
ss45269328	mCV24434686	ABI	CRAMUS_MOUSE	f	SNP	C	C					T		C
ss147410059	ENSMUSSNP3999961	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320487215	CHEV_2_121976036	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425703					SNP	C	C	C	C	C	C	T	T	C	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644523	NES09020153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980781 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19807	transcription start site region 19807	1116 bp downstream
Tssr19808	transcription start site region 19808	1042 bp downstream
Tssr19809	transcription start site region 19809	726 bp downstream
Tssr19810	transcription start site region 19810	262 bp upstream
Tssr19811	transcription start site region 19811	575 bp upstream
Tssr19812	transcription start site region 19812	610 bp upstream
Tssr19813	transcription start site region 19813	634 bp upstream
Tssr19814	transcription start site region 19814	657 bp upstream
Tssr19815	transcription start site region 19815	673 bp upstream
Tssr19816	transcription start site region 19816	689 bp upstream
Tssr19817	transcription start site region 19817	712 bp upstream
Tssr19818	transcription start site region 19818	735 bp upstream
Tssr19819	transcription start site region 19819	792 bp upstream
Tssr25955	transcription start site region 25955	610 bp downstream
Tssr25956	transcription start site region 25956	687 bp downstream
Tssr25957	transcription start site region 25957	805 bp downstream