rs27425704 SNP Detail

Summary

• ID
  rs27425704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121979583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCATTTAG CATGTTCTTG TTTCCAAAAC CTCAAATGCA
  AGGAAAAATG TGGTTTATGC TAATTTAAAT TTATGGGGAC AAAAAGAATT CAAAGCTTTA
  Y
  TGAGACCTTC ATTCTAGCTG GCCACAGTTT TCAGGTTTTC CTCTCCCTAC TGCCTTCCAT
  GGGTGAATAA GAGGCTGCTC TTCAGAGACC GTGCACACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644524	NES09020210	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	C	T		C		C	C	C		C
ss147410044	ENSMUSSNP1087314	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss320487211	CHEV_2_121974838	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425704					SNP	C	C	T	C	T	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644524	NES09020210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121979583 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	858 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr397252	regulatory region 397252	1373 bp downstream
Tssr19804	transcription start site region 19804	1608 bp downstream
Tssr19805	transcription start site region 19805	1406 bp downstream
Tssr19806	transcription start site region 19806	1374 bp downstream
Tssr19807	transcription start site region 19807	62 bp upstream
Tssr19808	transcription start site region 19808	115 bp upstream
Tssr19809	transcription start site region 19809	459 bp upstream
Tssr19810	transcription start site region 19810	1460 bp upstream
Tssr19811	transcription start site region 19811	1773 bp upstream
Tssr19812	transcription start site region 19812	1808 bp upstream
Tssr19813	transcription start site region 19813	1832 bp upstream
Tssr19814	transcription start site region 19814	1855 bp upstream
Tssr19815	transcription start site region 19815	1871 bp upstream
Tssr19816	transcription start site region 19816	1887 bp upstream
Tssr19817	transcription start site region 19817	1910 bp upstream
Tssr19818	transcription start site region 19818	1933 bp upstream
Tssr19819	transcription start site region 19819	1990 bp upstream
Tssr25954	transcription start site region 25954	1582 bp upstream
Tssr25955	transcription start site region 25955	1808 bp downstream
Tssr25956	transcription start site region 25956	1885 bp downstream