rs27425705 SNP Detail

Summary

• ID
  rs27425705
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG CTTGGGTCCC AGACTCTGCG
  W
  TGTTTCCAAA GCTTTCTGAT CATTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644525	NES09020286	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		A	T	T	A		A	T	T	A		T
ss45366664	mCV24434407	ABI	CRAMUS_MOUSE	f	SNP	T	T					A		T
ss147410022	ENSMUSSNP5987781	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320487207	CHEV_2_121973951	CHEVERUD	SCREENING_POP	f	SNP												A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27425705					SNP	T	T	T	T	T	T	A	A	T	T	A	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644525	NES09020286	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978696 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	486 bp downstream
Rr563912	regulatory region 563912	519 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	721 bp downstream
Tssr19805	transcription start site region 19805	519 bp downstream
Tssr19806	transcription start site region 19806	487 bp downstream
Tssr19807	transcription start site region 19807	949 bp upstream
Tssr19808	transcription start site region 19808	1002 bp upstream
Tssr19809	transcription start site region 19809	1346 bp upstream
Tssr25953	transcription start site region 25953	1258 bp upstream
Tssr25954	transcription start site region 25954	695 bp upstream