rs27425707 SNP Detail

Summary

• ID
  rs27425707
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGGTCAG CGCTGAAGAT
  GGGGAAGGCT TCTCTTTTTC TCCTCTGCTG GCGGGAGCCC CTAGACTCCC TGAGCGCAAA
  AGGAGGGTGG GGCTGCCTGG AAAGTGCAGG GTGGAGGGCT ATGGGCACGC GGAAGCTGAG
  CCCCGACCAC GGGAAGTCAG ACCGCCGCTG CGCAGCTTCA TTTGCACTCG CAGAGAGGCT
  S
  GATCCAACCG AAGTCGAGAG AAAATGGGCT TGGGTCCCAG ACTCTGCGAT GTTTCCAAAG
  CTTTCTGATC ATTAACTTTG TATCTAGTAA TAACCTTAAA GGTCGCCGGG CAGTGGTGGC
  TCACGCCTTT CATGCCAGCA CTTGGGAGGC AGAGGTAGGC GGATTTCTGA ATTCGAGGCC
  AGCCTGGTCT ACAGAGTGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37644527	NES09020283	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27425707					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644527	NES09020283	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978647 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Intron
Cpgi12169	CpG island 12169	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	437 bp downstream
Rr563912	regulatory region 563912	470 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	672 bp downstream
Tssr19805	transcription start site region 19805	470 bp downstream
Tssr19806	transcription start site region 19806	438 bp downstream
Tssr19807	transcription start site region 19807	998 bp upstream
Tssr19808	transcription start site region 19808	1051 bp upstream
Tssr19809	transcription start site region 19809	1395 bp upstream
Tssr25953	transcription start site region 25953	1209 bp upstream
Tssr25954	transcription start site region 25954	646 bp upstream